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    Colony PCR for 2022 iGEM

    Team Fudan iGEM

    Published: 2022-10-11 DOI: 10.17504/protocols.io.rm7vzb352vx1/v1
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    Abstract

    Based on manual included in Vazyme Taq product

    Steps

    1.

    Select colonies on the agar plate to pick. Culture portion of the colony in LB media with antibiotic and grow in 37 degree. Put the remainder of the colony into a correspondingly numbered PCR tube with 20 µL of reaction mix (as below), and pipetting to complete resuspend the bacteria.

    2.
    AB
    ComponentVolume/ul
    10x Taq Buffer2 uL
    10 uM Forward Primer0.5 uL
    10 uM Reverse Primer0.5 uL
    Template DNA (bacteria colony)added later
    dNTP 10 mM mix0.5 uL
    Taq DNA polymerase0.5 uL
    distilled water16 uL
    Total20 uL

    Prepare PCR reaction mix before step 1, and place the mix on ice. Primers used for screening crt genes insertion are:

    > 5-crtB
    5-ATGAATAATCCGTCGTTACTCAATCATGC-3
    
    > 5-crtE
    5-ATGACGGTCTGCGCAAAAAAAC-3
    
    > 5-crtI
    5-ATGAAACCAACTACGGTAATTGGTGC-3
    
    > 5-crtY
    5-ATGCAACCGCATTATGATCTGATTC-3
    
    > rev320crtB
    5-CCTTCCAGATGATCAAACGCGTAAG-3
    
    > rev320crtE
    5-ATGAGAATGAATGGTAGGGCGTC-3
    
    > rev320crtI
    5-GGATTAAACTGCTGAATCTGCGCTTC-3
    
    > rev320crtY
    5-CCGCGGTATCCATCCACAAG-3
    
    3.
    AB
    TemperatureTime
    94℃05:00
    94℃00:30
    60℃00:30
    72℃03:30, cycle 3-4-5 for 25 times
    72℃05:00
    16℃∞

    The PCR program above is for screening crt genes insertion during 2022 iGEM season.

    4.

    Agarose gel electrophoresis of PCR products. One lane on the gel is loaded with 6 uL D2000 DNA ladder. Run the gel at 100 V for 20-30 minutes, and examine the gel under UV.

    5.

    The correct bacterial clones are sent for Sanger sequencing. Once verified, these clones would be used for further experiments.

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